Description: Use shared libs
Subject: use-shared-libs
From: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
---
 kmer_counter/fastq_reader.h | 8 ++++----
 makefile                    | 8 ++------
 2 files changed, 6 insertions(+), 10 deletions(-)

--- kmc.orig/kmc_tools/fastq_reader.h
+++ kmc/kmc_tools/fastq_reader.h
@@ -17,8 +17,8 @@
 #include <stdio.h>
 #include <iostream>
 
-#include "libs/zlib.h"
-#include "libs/bzlib.h"
+#include <zlib.h>
+#include <bzlib.h>
 
 
 using namespace std;
@@ -96,4 +96,4 @@
 
 #endif
 
-// ***** EOF
\ No newline at end of file
+// ***** EOF
--- kmc.orig/Makefile
+++ kmc/Makefile
@@ -53,14 +53,6 @@
 ifeq ($(UNAME_S),Darwin)
 	RADULS_OBJS =
 
-	KMC_LIBS = \
-	$(KMC_MAIN_DIR)/libs/libz.1.2.5.dylib \
-	$(KMC_MAIN_DIR)/libs/libbz2.1.0.5.dylib
-
-	KMC_TOOLS_LIBS = \
-	$(KMC_TOOLS_DIR)/libs/libz.1.2.5.dylib \
-	$(KMC_TOOLS_DIR)/libs/libbz2.1.0.5.dylib
-
 	LIB_KMC_CORE = $(OUT_BIN_DIR)/libkmc_core.mac.a
 else
 	RADULS_OBJS = \
@@ -69,14 +61,6 @@
 	$(KMC_MAIN_DIR)/raduls_avx2.o \
 	$(KMC_MAIN_DIR)/raduls_avx.o
 
-	KMC_LIBS = \
-	$(KMC_MAIN_DIR)/libs/libz.a \
-	$(KMC_MAIN_DIR)/libs/libbz2.a
-
-	KMC_TOOLS_LIBS = \
-	$(KMC_TOOLS_DIR)/libs/libz.a \
-	$(KMC_TOOLS_DIR)/libs/libbz2.a
-
 	LIB_KMC_CORE = $(OUT_BIN_DIR)/libkmc_core.a
 endif
 
--- kmc.orig/kmc_core/fastq_reader.h
+++ kmc/kmc_core/fastq_reader.h
@@ -15,8 +15,8 @@
 #include "params.h"
 #include <stdio.h>
 
-#include "libs/zlib.h"
-#include "libs/bzlib.h"
+#include <zlib.h>
+#include <bzlib.h>
 
 using namespace std;
 
